Parisian Master of Research in Computer Science
Master Parisien de Recherche en Informatique (MPRI)

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cours:c-1-32 [2019/09/19 18:06]
gambette [Evaluation / exams (year 2019-2020)]
cours:c-1-32 [2019/09/24 17:30] (current)
gambette [Short description (year 2019-2020)]
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     * Lecture 2: Sequence comparison (Gregory Kucherov) :     * Lecture 2: Sequence comparison (Gregory Kucherov) :
         * dynamic programming for sequence alignment: Needleman-Wunsch, Smith-Waterman & Hirschberg algorithms.          * dynamic programming for sequence alignment: Needleman-Wunsch, Smith-Waterman & Hirschberg algorithms. 
 +          * {{ :cours:upload:c-1-32-kucherov-lecture2-1.pdf|slides}}
         * heuristic methods: seed-based approaches, BLAST-like algorithms. Spaced seeds.         * heuristic methods: seed-based approaches, BLAST-like algorithms. Spaced seeds.
 +          * {{ :cours:upload:c-1-32-kucherov-lecture2-seeds.pdf|slides}}
         * Sketching approach to sequence comparison: MinHash         * Sketching approach to sequence comparison: MinHash
     * Lecture 3: Data structures for bioinformatics (Gregory Kucherov) :     * Lecture 3: Data structures for bioinformatics (Gregory Kucherov) :
 
Universités partenaires Université Paris-Diderot
Université Paris-Saclay
ENS Cachan École polytechnique Télécom ParisTech
ENS
Établissements associés Université Pierre-et-Marie-Curie CNRS INRIA CEA